7/18/2018
Raw centroids
median value of markers in each cluster
Normalized centroids
median z-score of markers in each cluster
Freq cluster
median z-score of markers in each cluster
Freq population
median z-score of markers in each cluster
Meta Phenograph +Meta tsne
colored by “meta” phenograph cluster
colored by control
Meta Phenograph +Meta tsne
colored by percent of cells that are naive in original clusters
keep slide 4 in mind
Meta Phenograph +Meta tsne
colored by percent of cells that are effector in original clusters
Meta Phenograph +Meta tsne
colored by percent of cells that are effector memory in original clusters
Meta Phenograph +Meta tsne
colored by percent of cells that are central memory in original clusters
Meta Phenograph +Meta tsne
colored by median CD45 (scaled) expression in original clusters
Meta Phenograph +Meta tsne
colored by median CCR7 (scaled) expression in original clusters
Meta Phenograph +Meta tsne
colored by median CD28 (scaled) expression in original clusters
Meta Phenograph +Meta tsne
colored by median CD95 (scaled) expression in original clusters
## ## FALSE TRUE ## 65 12